J3_9YDE_015

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9YDE_015 not in the Motif Atlas

Homologous match to J3_9PN5_016

Geometric discrepancy: 0.1089

The information below is about J3_9PN5_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05348.4

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

9YDE|1|A|C|1631
9YDE|1|A|A|1632
*
9YDE|1|A|U|1641
9YDE|1|A|A|1642
9YDE|1|A|A|1643
9YDE|1|A|C|1644
9YDE|1|A|U|1645
*
9YDE|1|A|A|1810
9YDE|1|A|G|1811

Current chains

Chain A

25S RNA

Nearby chains

Chain Lb

60S ribosomal protein L27-A

Chain Li

60S ribosomal protein L34-A

Chain Lm

60S ribosomal protein L38