J3_9YPG_016

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9YPG_016 not in the Motif Atlas

Homologous match to J3_8GLP_032

Geometric discrepancy: 0.0719

The information below is about J3_8GLP_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05348.4

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

9YPG|1|5|U|2575
9YPG|1|5|G|2576
*
9YPG|1|5|C|2585
9YPG|1|5|G|2586
9YPG|1|5|A|2587
9YPG|1|5|C|2588
9YPG|1|5|C|2589
*
9YPG|1|5|G|2756
9YPG|1|5|A|2757

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L27

Chain g

Large ribosomal subunit protein eL34