J3_9YPO_001

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

9YPO|1|5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|C|112
9YPO|1|5|A|113
9YPO|1|5|G|114
9YPO|1|5|C|115
9YPO|1|5|G|116
*
9YPO|1|5|C|155
9YPO|1|5|G|156
9YPO|1|5|U|157
9YPO|1|5|A|158
9YPO|1|5|C|159
9YPO|1|5|G|160
*
9YPO|1|5|C|275
9YPO|1|5|C|276
9YPO|1|5|G|277
9YPO|1|5|G|278

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain h

eL35

Chain i

60S ribosomal protein L36