J3_9YPO_015

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

9YPO|1|5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|A|2551
9YPO|1|5|G|2552
9YPO|1|5|A|2553
9YPO|1|5|U|2554
9YPO|1|5|G|2555
*
9YPO|1|5|C|2572
9YPO|1|5|A|2573
9YPO|1|5|G|2574
9YPO|1|5|U|2575
*
9YPO|1|5|A|2757
9YPO|1|5|G|2758
9YPO|1|5|G|2759
9YPO|1|5|G|2760
9YPO|1|5|U|2761
9YPO|1|5|G|2762
9YPO|1|5|U|2763
9YPO|1|5|A|2764
9YPO|1|5|A|2765
9YPO|1|5|A|2766
9YPO|1|5|U|2767

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L27