J3_9YPO_032

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

9YPO|1|9|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|9|A|938
9YPO|1|9|U|939
9YPO|1|9|U|940
9YPO|1|9|C|941
*
9YPO|1|9|G|985
9YPO|1|9|G|986
9YPO|1|9|A|987
9YPO|1|9|C|988
9YPO|1|9|C|989
9YPO|1|9|A|990
9YPO|1|9|G|991
9YPO|1|9|A|992
9YPO|1|9|G|993
*
9YPO|1|9|C|1000
9YPO|1|9|A|1001
9YPO|1|9|U|1002
9YPO|1|9|U|1003
9YPO|1|9|U|1004

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain BB

40S ribosomal protein S3a

Chain NN

Ribosomal protein S13

Chain OO

Small ribosomal subunit protein uS11

Chain aa

40S ribosomal protein S26

Chain p

eL43