J3_9YPO_034

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|9|C|1218
9YPO|1|9|C|1219
9YPO|1|9|A|1220
9YPO|1|9|G|1221
*
9YPO|1|9|C|1645
9YPO|1|9|C|1646
9YPO|1|9|A|1647
9YPO|1|9|G|1648
9YPO|1|9|U|1649
9YPO|1|9|A|1650
9YPO|1|9|A|1651
*
9YPO|1|9|U|1673
9YPO|1|9|G|1674
9YPO|1|9|A|1675
9YPO|1|9|U|1676
9YPO|1|9|U|1677
9YPO|1|9|A|1678
9YPO|1|9|A|1679
9YPO|1|9|G|1680

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 11

Transfer RNA; tRNA

Chain FF

Ribosomal protein S5

Chain QQ

uS9

Chain cc

Ribosomal protein S28