J3_9YPS_004
3D structure
- PDB id
- 9YPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUGAAAAG*CG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YPS_004 not in the Motif Atlas
- Geometric match to J3_8GLP_025
- Geometric discrepancy: 0.0539
- The information below is about J3_8GLP_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.4
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 12
Unit IDs
9YPS|1|5|U|380
9YPS|1|5|U|381
9YPS|1|5|G|382
9YPS|1|5|A|383
9YPS|1|5|A|384
9YPS|1|5|A|385
9YPS|1|5|A|386
9YPS|1|5|G|387
*
9YPS|1|5|C|414
9YPS|1|5|G|415
*
9YPS|1|8|C|19
9YPS|1|8|A|20
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain Y
- uL24
- Chain l
- eL39
Coloring options: