J3_9YPS_016

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9YPS_016 not in the Motif Atlas

Homologous match to J3_8GLP_032

Geometric discrepancy: 0.0733

The information below is about J3_8GLP_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05348.4

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

9YPS|1|5|U|2575
9YPS|1|5|G|2576
*
9YPS|1|5|C|2585
9YPS|1|5|G|2586
9YPS|1|5|A|2587
9YPS|1|5|C|2588
9YPS|1|5|C|2589
*
9YPS|1|5|G|2756
9YPS|1|5|A|2757

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L27

Chain g

Large ribosomal subunit protein eL34