J3_9YPT_011
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAGUG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 9YPT|1|5|A|2396
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YPT_011 not in the Motif Atlas
- Homologous match to J3_8GLP_004
- Geometric discrepancy: 0.0653
- The information below is about J3_8GLP_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05025.4
- Basepair signature
- cWW-tSH-tWW-tHW-cWW-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
9YPT|1|5|C|2393
9YPT|1|5|G|2394
9YPT|1|5|A|2395
9YPT|1|5|A|2396
9YPT|1|5|G|2397
9YPT|1|5|U|2398
9YPT|1|5|G|2399
*
9YPT|1|5|C|2805
9YPT|1|5|A|2806
9YPT|1|5|A|2807
*
9YPT|1|5|U|2819
9YPT|1|5|C|2820
9YPT|1|5|U|2821
9YPT|1|5|G|2822
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain R
- Ribosomal protein L19
- Chain g
- Large ribosomal subunit protein eL34
Coloring options: