J3_9YPT_012

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

9YPT|1|5|U|2788, 9YPT|1|5|A|2789, 9YPT|1|5|U|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|5|G|2402
9YPT|1|5|A|2403
9YPT|1|5|A|2404
9YPT|1|5|G|2405
*
9YPT|1|5|C|2785
9YPT|1|5|C|2786
9YPT|1|5|A|2787
9YPT|1|5|U|2788
9YPT|1|5|A|2789
9YPT|1|5|U|2790
9YPT|1|5|C|2791
*
9YPT|1|5|G|2800
9YPT|1|5|U|2801
9YPT|1|5|C|2802

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain g

Large ribosomal subunit protein eL34

Chain j

Ribosomal protein L37

Chain l

eL39