J3_9YPT_018
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 9YPT|1|5|G|4076
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YPT_018 not in the Motif Atlas
- Homologous match to J3_8GLP_007
- Geometric discrepancy: 0.1032
- The information below is about J3_8GLP_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9YPT|1|5|C|3937
9YPT|1|5|G|3938
9YPT|1|5|G|3939
*
9YPT|1|5|C|4074
9YPT|1|5|U|4075
9YPT|1|5|G|4076
9YPT|1|5|A|4077
9YPT|1|5|C|4078
*
9YPT|1|5|G|4168
9YPT|1|5|G|4169
9YPT|1|5|A|4170
9YPT|1|5|C|4171
9YPT|1|5|A|4172
9YPT|1|5|G|4173
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain G
- 60S ribosomal protein L7a
- Chain N
- Ribosomal protein L15
- Chain i
- 60S ribosomal protein L36
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