J3_9YPT_034

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|9|C|1218
9YPT|1|9|C|1219
9YPT|1|9|A|1220
9YPT|1|9|G|1221
*
9YPT|1|9|C|1645
9YPT|1|9|C|1646
9YPT|1|9|A|1647
9YPT|1|9|G|1648
9YPT|1|9|U|1649
9YPT|1|9|A|1650
9YPT|1|9|A|1651
*
9YPT|1|9|U|1673
9YPT|1|9|G|1674
9YPT|1|9|A|1675
9YPT|1|9|U|1676
9YPT|1|9|U|1677
9YPT|1|9|A|1678
9YPT|1|9|A|1679
9YPT|1|9|G|1680

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 11

Transfer RNA; tRNA

Chain FF

Ribosomal protein S5

Chain QQ

uS9

Chain cc

Ribosomal protein S28