J3_9YPT_041

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9YPT|1|9|U|1535, 9YPT|1|9|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9YPT_041 not in the Motif Atlas

Homologous match to J3_9PN5_043

Geometric discrepancy: 0.1347

The information below is about J3_9PN5_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.4

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

7

Unit IDs

9YPT|1|9|C|1532
9YPT|1|9|A|1533
9YPT|1|9|C|1534
9YPT|1|9|U|1535
9YPT|1|9|G|1536
*
9YPT|1|9|C|1597
9YPT|1|9|G|1598
9YPT|1|9|U|1599
9YPT|1|9|G|1600
9YPT|1|9|A|1601
9YPT|1|9|U|1602
9YPT|1|9|G|1603
9YPT|1|9|G|1604
*
9YPT|1|9|C|1635
9YPT|1|9|G|1636
9YPT|1|9|A|1637
9YPT|1|9|G|1638

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain FF

Ribosomal protein S5

Chain SS

uS13

Chain TT

eS19

Chain ZZ

eS25