J3_9YPV_014
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CAGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 9YPV|1|5|C|2470, 9YPV|1|5|A|2472, 9YPV|1|5|G|2475, 9YPV|1|5|G|2503, 9YPV|1|5|C|2504
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPV|1|5|A|2451
9YPV|1|5|G|2452
9YPV|1|5|A|2453
9YPV|1|5|U|2454
9YPV|1|5|G|2455
9YPV|1|5|G|2456
*
9YPV|1|5|C|2465
9YPV|1|5|G|2466
9YPV|1|5|U|2467
9YPV|1|5|U|2468
9YPV|1|5|C|2469
9YPV|1|5|C|2470
9YPV|1|5|G|2471
9YPV|1|5|A|2472
9YPV|1|5|A|2473
9YPV|1|5|G|2474
9YPV|1|5|G|2475
9YPV|1|5|G|2476
*
9YPV|1|5|C|2501
9YPV|1|5|A|2502
9YPV|1|5|G|2503
9YPV|1|5|C|2504
9YPV|1|5|C|2505
9YPV|1|5|G|2506
9YPV|1|5|A|2507
9YPV|1|5|U|2508
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- Ribosomal protein L8
- Chain G
- 60S ribosomal protein L7a
- Chain N
- Ribosomal protein L15
- Chain X
- eL23
- Chain j
- Ribosomal protein L37
Coloring options: