J3_9YPV_032

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

9YPV|1|9|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPV|1|9|A|938
9YPV|1|9|U|939
9YPV|1|9|U|940
9YPV|1|9|C|941
*
9YPV|1|9|G|985
9YPV|1|9|G|986
9YPV|1|9|A|987
9YPV|1|9|C|988
9YPV|1|9|C|989
9YPV|1|9|A|990
9YPV|1|9|G|991
9YPV|1|9|A|992
9YPV|1|9|G|993
*
9YPV|1|9|C|1000
9YPV|1|9|A|1001
9YPV|1|9|U|1002
9YPV|1|9|U|1003
9YPV|1|9|U|1004

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain BB

40S ribosomal protein S3a

Chain NN

Ribosomal protein S13

Chain OO

Small ribosomal subunit protein uS11

Chain aa

40S ribosomal protein S26

Chain p

eL43