J3_9YPY_001

3D structure

PDB id

9YPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome with accommodated A-site tRNA, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

9YPY|1|5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPY|1|5|C|112
9YPY|1|5|A|113
9YPY|1|5|G|114
9YPY|1|5|C|115
9YPY|1|5|G|116
*
9YPY|1|5|C|155
9YPY|1|5|G|156
9YPY|1|5|U|157
9YPY|1|5|A|158
9YPY|1|5|C|159
9YPY|1|5|G|160
*
9YPY|1|5|C|275
9YPY|1|5|C|276
9YPY|1|5|G|277
9YPY|1|5|G|278

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain h

eL35

Chain i

60S ribosomal protein L36