J3_9YQ1_011
3D structure
- PDB id
- 9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 3, Structure Ic
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAGUG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 9YQ1|1|5|A|2396, 9YQ1|1|5|U|2398
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YQ1_011 not in the Motif Atlas
- Homologous match to J3_8GLP_004
- Geometric discrepancy: 0.0516
- The information below is about J3_8GLP_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05025.3
- Basepair signature
- cWW-tSH-tWW-tHW-cWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9YQ1|1|5|C|2393
9YQ1|1|5|G|2394
9YQ1|1|5|A|2395
9YQ1|1|5|A|2396
9YQ1|1|5|G|2397
9YQ1|1|5|U|2398
9YQ1|1|5|G|2399
*
9YQ1|1|5|C|2805
9YQ1|1|5|A|2806
9YQ1|1|5|A|2807
*
9YQ1|1|5|U|2819
9YQ1|1|5|C|2820
9YQ1|1|5|U|2821
9YQ1|1|5|G|2822
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain R
- Ribosomal protein L19
- Chain g
- Large ribosomal subunit protein eL34
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