J3_9YQ1_015

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

9YQ1|1|5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|5|A|2551
9YQ1|1|5|G|2552
9YQ1|1|5|A|2553
9YQ1|1|5|U|2554
9YQ1|1|5|G|2555
*
9YQ1|1|5|C|2572
9YQ1|1|5|A|2573
9YQ1|1|5|G|2574
9YQ1|1|5|U|2575
*
9YQ1|1|5|A|2757
9YQ1|1|5|G|2758
9YQ1|1|5|G|2759
9YQ1|1|5|G|2760
9YQ1|1|5|U|2761
9YQ1|1|5|G|2762
9YQ1|1|5|U|2763
9YQ1|1|5|A|2764
9YQ1|1|5|A|2765
9YQ1|1|5|A|2766
9YQ1|1|5|U|2767

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L27