J3_9YQ1_034

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9YQ1_034 not in the Motif Atlas

Homologous match to J3_9H3G_035

Geometric discrepancy: 0.1136

The information below is about J3_9H3G_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.3

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

6

Unit IDs

9YQ1|1|9|C|1218
9YQ1|1|9|C|1219
9YQ1|1|9|A|1220
9YQ1|1|9|G|1221
*
9YQ1|1|9|C|1645
9YQ1|1|9|C|1646
9YQ1|1|9|A|1647
9YQ1|1|9|G|1648
9YQ1|1|9|U|1649
9YQ1|1|9|A|1650
9YQ1|1|9|A|1651
*
9YQ1|1|9|U|1673
9YQ1|1|9|G|1674
9YQ1|1|9|A|1675
9YQ1|1|9|U|1676
9YQ1|1|9|U|1677
9YQ1|1|9|A|1678
9YQ1|1|9|A|1679
9YQ1|1|9|G|1680

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 11

Transfer RNA; tRNA

Chain FF

Ribosomal protein S5

Chain QQ

uS9

Chain cc

Ribosomal protein S28