J3_9YQ1_041

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9YQ1|1|9|U|1535, 9YQ1|1|9|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|9|C|1532
9YQ1|1|9|A|1533
9YQ1|1|9|C|1534
9YQ1|1|9|U|1535
9YQ1|1|9|G|1536
*
9YQ1|1|9|C|1597
9YQ1|1|9|G|1598
9YQ1|1|9|U|1599
9YQ1|1|9|G|1600
9YQ1|1|9|A|1601
9YQ1|1|9|U|1602
9YQ1|1|9|G|1603
9YQ1|1|9|G|1604
*
9YQ1|1|9|C|1635
9YQ1|1|9|G|1636
9YQ1|1|9|A|1637
9YQ1|1|9|G|1638

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain FF

Ribosomal protein S5

Chain SS

uS13

Chain TT

eS19

Chain ZZ

eS25