J4_10PX_005
3D structure
- PDB id
- 10PX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.45 Å
Loop
- Sequence
- UC*GGUUAG*CU*ACCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 10PX|1|1A|U|1341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_10PX_005 not in the Motif Atlas
- Homologous match to J4_7A0S_006
- Geometric discrepancy: 0.1447
- The information below is about J4_7A0S_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.2
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
10PX|1|1A|U|1313
10PX|1|1A|C|1314
*
10PX|1|1A|G|1338
10PX|1|1A|G|1339
10PX|1|1A|U|1340
10PX|1|1A|U|1341
10PX|1|1A|A|1342
10PX|1|1A|G|1343
*
10PX|1|1A|C|1404
10PX|1|1A|U|1405
*
10PX|1|1A|A|1597
10PX|1|1A|C|1598
10PX|1|1A|C|1599
10PX|1|1A|C|1600
10PX|1|1A|G|1601
10PX|1|1A|U|1602
10PX|1|1A|A|1603
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1X
- 50S ribosomal protein L23
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