J4_10PX_028

3D structure

PDB id

10PX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with benzoxaborole derivative of azithromycin (AZI-BB2), mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

10PX|1|2a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_10PX_028 not in the Motif Atlas

Homologous match to J4_6CZR_012

Geometric discrepancy: 0.1974

The information below is about J4_6CZR_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_36568.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-tWH-tWH-F-cWW-F

Number of instances in this motif group

2

Unit IDs

10PX|1|2a|G|142
10PX|1|2a|A|143
10PX|1|2a|G|144
*
10PX|1|2a|C|178
10PX|1|2a|A|179
10PX|1|2a|U|180
10PX|1|2a|G|181
10PX|1|2a|U|182
10PX|1|2a|G|183
*
10PX|1|2a|C|194
10PX|1|2a|A|195
10PX|1|2a|A|196
10PX|1|2a|A|197
10PX|1|2a|G|198
*
10PX|1|2a|C|219
10PX|1|2a|G|220
10PX|1|2a|C|221

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20