J4_10QM_001

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

10QM|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_10QM_001 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2811

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

10QM|1|I|C|268
10QM|1|I|C|269
*
10QM|1|I|G|370
10QM|1|I|A|371
10QM|1|I|G|372
10QM|1|I|U|373
10QM|1|I|A|374
10QM|1|I|G|375
*
10QM|1|I|U|399
10QM|1|I|G|400
10QM|1|I|A|401
10QM|1|I|A|402
10QM|1|I|U|403
10QM|1|I|A|404
10QM|1|I|U|405
10QM|1|I|G|406
*
10QM|1|I|C|421
10QM|1|I|A|422
10QM|1|I|A|423
10QM|1|I|G|424

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein bL9

Chain f

50S ribosomal protein L28