J4_10QM_002

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_10QM_002 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1079

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

10QM|1|I|G|297
10QM|1|I|G|298
10QM|1|I|A|299
10QM|1|I|A|300
10QM|1|I|G|301
*
10QM|1|I|C|316
10QM|1|I|G|317
10QM|1|I|C|318
10QM|1|I|G|319
*
10QM|1|I|C|323
10QM|1|I|A|324
10QM|1|I|G|325
*
10QM|1|I|C|337
10QM|1|I|G|338
10QM|1|I|U|339
10QM|1|I|A|340
10QM|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL4

Chain c

50S ribosomal protein L24