J4_10QM_006

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

10QM|1|I|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_10QM_006 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.2382

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

10QM|1|I|U|1313
10QM|1|I|C|1314
*
10QM|1|I|G|1338
10QM|1|I|G|1339
10QM|1|I|U|1340
10QM|1|I|G|1341
10QM|1|I|A|1342
10QM|1|I|G|1343
*
10QM|1|I|C|1404
10QM|1|I|U|1405
*
10QM|1|I|A|1597
10QM|1|I|A|1598
10QM|1|I|U|1599
10QM|1|I|C|1600
10QM|1|I|G|1601
10QM|1|I|U|1602
10QM|1|I|A|1603

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L23

Chain g

Large ribosomal subunit protein uL29