J4_10QM_008

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_10QM_008 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0639

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

10QM|1|I|A|1772
10QM|1|I|A|1773
10QM|1|I|C|1774
10QM|1|I|U|1775
10QM|1|I|G|1776
*
10QM|1|I|C|1788
10QM|1|I|A|1789
10QM|1|I|C|1790
10QM|1|I|A|1791
10QM|1|I|G|1792
*
10QM|1|I|U|1827
10QM|1|I|G|1828
10QM|1|I|A|1829
10QM|1|I|C|1830
*
10QM|1|I|G|1975
10QM|1|I|U|1976
10QM|1|I|A|1977
10QM|1|I|A|1978
10QM|1|I|U|1979

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2