J4_10QM_011

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

10QM|1|I|G|2643
10QM|1|I|G|2644
10QM|1|I|G|2645
10QM|1|I|C|2646
*
10QM|1|I|G|2674
10QM|1|I|A|2675
10QM|1|I|C|2676
*
10QM|1|I|G|2731
10QM|1|I|G|2732
10QM|1|I|A|2733
10QM|1|I|A|2734
10QM|1|I|G|2735
*
10QM|1|I|U|2769
10QM|1|I|G|2770
10QM|1|I|C|2771

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain R

Large ribosomal subunit protein uL13

Chain S

Large ribosomal subunit protein uL14