J4_8B0X_014

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8B0X_014 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.047

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8B0X|1|a|G|2647
8B0X|1|a|G|2648
8B0X|1|a|G|2649
8B0X|1|a|C|2650
*
8B0X|1|a|G|2678
8B0X|1|a|A|2679
8B0X|1|a|C|2680
*
8B0X|1|a|G|2735
8B0X|1|a|G|2736
8B0X|1|a|A|2737
8B0X|1|a|A|2738
8B0X|1|a|G|2739
*
8B0X|1|a|U|2773
8B0X|1|a|G|2774
8B0X|1|a|C|2775

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13

Chain j

50S ribosomal protein L14