J4_11BQ_001

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

11BQ|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11BQ_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5895

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

11BQ|1|A|G|115
11BQ|1|A|A|116
11BQ|1|A|G|117
11BQ|1|A|U|118
11BQ|1|A|A|119
11BQ|1|A|A|120
11BQ|1|A|U|121
11BQ|1|A|G|122
*
11BQ|1|A|U|239
11BQ|1|A|G|240
*
11BQ|1|A|C|286
11BQ|1|A|U|287
11BQ|1|A|A|288
11BQ|1|A|G|289
*
11BQ|1|A|C|311
11BQ|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17