#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7break 8 9break 10 11 12 13break 14 151-155-117-89-1013-14
1 J4_5J7L_0015J7L0.08341AA SSU rRNAG115A116G117U118A119A120G122*U239G240*C286U287A288G289*C311C312cWWtHWcWWcWWcWW
2 J4_4LFB_0014LFB0.00001A SSU rRNAG115A116G117U118A119A120G122*U239C240*G286U287A288G289*C311C312cWWtHWcWWcWWcWW
3 J4_6CZR_0276CZR0.112211a SSU rRNAG109A110G111U112A113A114G116*U235C236*G282U283A284G285*C307C308cWWtHWncWWcWWncWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAGUAACG*UC*GUAG*CC2
GAGUAAUG*UG*CUAG*CC1
Non-Watson-Crick part of the motif
SequenceCounts
AGUAAC**UA*2
AGUAAU**UA*1

Release history

Release3.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.95
Date2019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-09-142022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-112024-10-092024-11-062024-12-042025-01-012025-01-292025-02-262025-03-26
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (3)
  • Basepair signature
    cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
    Heat map statistics
    Min 0.08 | Avg 0.07 | Max 0.12
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