J4_11BQ_004

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

11BQ|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11BQ_004 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2837

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

11BQ|1|a|C|268
11BQ|1|a|C|269
*
11BQ|1|a|G|370
11BQ|1|a|A|371
11BQ|1|a|G|372
11BQ|1|a|U|373
11BQ|1|a|A|374
11BQ|1|a|G|375
*
11BQ|1|a|U|399
11BQ|1|a|G|400
11BQ|1|a|A|401
11BQ|1|a|A|402
11BQ|1|a|U|403
11BQ|1|a|A|404
11BQ|1|a|U|405
11BQ|1|a|G|406
*
11BQ|1|a|C|421
11BQ|1|a|A|422
11BQ|1|a|A|423
11BQ|1|a|G|424

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

50S ribosomal protein L28