J4_11DG_005

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11DG_005 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1284

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

11DG|1|a|G|297
11DG|1|a|G|298
11DG|1|a|A|299
11DG|1|a|A|300
11DG|1|a|G|301
*
11DG|1|a|C|316
11DG|1|a|G|317
11DG|1|a|C|318
11DG|1|a|G|319
*
11DG|1|a|C|323
11DG|1|a|A|324
11DG|1|a|G|325
*
11DG|1|a|C|337
11DG|1|a|G|338
11DG|1|a|U|339
11DG|1|a|A|340
11DG|1|a|C|341

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

50S ribosomal protein L24