J4_11DG_006

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

11DG|1|a|U|653, 11DG|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11DG|1|a|C|601
11DG|1|a|A|602
11DG|1|a|A|603
11DG|1|a|G|604
*
11DG|1|a|C|624
11DG|1|a|G|625
11DG|1|a|A|626
11DG|1|a|A|627
11DG|1|a|G|628
*
11DG|1|a|C|635
11DG|1|a|G|636
11DG|1|a|A|637
11DG|1|a|G|638
*
11DG|1|a|C|650
11DG|1|a|G|651
11DG|1|a|U|652
11DG|1|a|U|653
11DG|1|a|A|654
11DG|1|a|A|655
11DG|1|a|G|656

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15