J4_8B0X_006
3D structure
- PDB id
- 8B0X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 70S ribosome in the unrotated state (P and E, tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 8B0X|1|a|U|655, 8B0X|1|a|A|656
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8B0X_006 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.1351
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8B0X|1|a|C|603
8B0X|1|a|A|604
8B0X|1|a|A|605
8B0X|1|a|G|606
*
8B0X|1|a|C|626
8B0X|1|a|G|627
8B0X|1|a|A|628
8B0X|1|a|A|629
8B0X|1|a|G|630
*
8B0X|1|a|C|637
8B0X|1|a|G|638
8B0X|1|a|A|639
8B0X|1|a|G|640
*
8B0X|1|a|C|652
8B0X|1|a|G|653
8B0X|1|a|U|654
8B0X|1|a|U|655
8B0X|1|a|A|656
8B0X|1|a|A|657
8B0X|1|a|G|658
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L35
- Chain e
- 50S ribosomal protein L4
- Chain k
- 50S ribosomal protein L15
Coloring options: