J4_11DG_007

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

11DG|1|a|G|1271, 11DG|1|a|A|1272, 11DG|1|a|U|1273, 11DG|1|a|A|1275, 11DG|1|a|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11DG_007 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.1636

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

11DG|1|a|C|1270
11DG|1|a|G|1271
11DG|1|a|A|1272
11DG|1|a|U|1273
11DG|1|a|A|1274
11DG|1|a|A|1275
11DG|1|a|A|1276
*
11DG|1|a|U|1294
11DG|1|a|C|1295
*
11DG|1|a|G|1645
11DG|1|a|C|1646
11DG|1|a|U|1647
11DG|1|a|U|1648
*
11DG|1|a|A|2009
11DG|1|a|G|2010

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22

Chain z

50S ribosomal protein L32