J4_11DG_014

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11DG|1|a|G|2643
11DG|1|a|G|2644
11DG|1|a|G|2645
11DG|1|a|C|2646
*
11DG|1|a|G|2674
11DG|1|a|A|2675
11DG|1|a|C|2676
*
11DG|1|a|G|2731
11DG|1|a|G|2732
11DG|1|a|A|2733
11DG|1|a|A|2734
11DG|1|a|G|2735
*
11DG|1|a|U|2769
11DG|1|a|G|2770
11DG|1|a|C|2771

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

Large ribosomal subunit protein uL13

Chain j

Large ribosomal subunit protein uL14