J4_11EL_004

3D structure

PDB id

11EL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Vibrio cholerae (VC-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

11EL|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11EL_004 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2613

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

11EL|1|a|C|268
11EL|1|a|C|269
*
11EL|1|a|G|370
11EL|1|a|A|371
11EL|1|a|G|372
11EL|1|a|U|373
11EL|1|a|A|374
11EL|1|a|G|375
*
11EL|1|a|U|399
11EL|1|a|G|400
11EL|1|a|A|401
11EL|1|a|A|402
11EL|1|a|U|403
11EL|1|a|A|404
11EL|1|a|U|405
11EL|1|a|G|406
*
11EL|1|a|C|421
11EL|1|a|A|422
11EL|1|a|A|423
11EL|1|a|G|424

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

50S ribosomal protein L28