J4_11EL_005
3D structure
- PDB id
- 11EL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Vibrio cholerae (VC-ST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_11EL_005 not in the Motif Atlas
- Homologous match to J4_7A0S_002
- Geometric discrepancy: 0.0976
- The information below is about J4_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
11EL|1|a|G|297
11EL|1|a|G|298
11EL|1|a|A|299
11EL|1|a|A|300
11EL|1|a|G|301
*
11EL|1|a|C|316
11EL|1|a|G|317
11EL|1|a|C|318
11EL|1|a|G|319
*
11EL|1|a|C|323
11EL|1|a|A|324
11EL|1|a|G|325
*
11EL|1|a|C|337
11EL|1|a|G|338
11EL|1|a|U|339
11EL|1|a|A|340
11EL|1|a|C|341
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain e
- Large ribosomal subunit protein uL4
- Chain t
- 50S ribosomal protein L24
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