J4_11EL_014

3D structure

PDB id

11EL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Vibrio cholerae (VC-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11EL|1|a|G|2643
11EL|1|a|G|2644
11EL|1|a|G|2645
11EL|1|a|C|2646
*
11EL|1|a|G|2674
11EL|1|a|A|2675
11EL|1|a|C|2676
*
11EL|1|a|G|2731
11EL|1|a|G|2732
11EL|1|a|A|2733
11EL|1|a|A|2734
11EL|1|a|G|2735
*
11EL|1|a|U|2769
11EL|1|a|G|2770
11EL|1|a|C|2771

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

Large ribosomal subunit protein uL13

Chain j

Large ribosomal subunit protein uL14