J4_11FV_001
3D structure
- PDB id
- 11FV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAGUAAUG*UC*GUAA*UC
- Length
- 16 nucleotides
- Bulged bases
- 11FV|1|C|U|115
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_11FV_001 not in the Motif Atlas
- Homologous match to J4_6CZR_027
- Geometric discrepancy: 0.1805
- The information below is about J4_6CZR_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.2
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
11FV|1|C|G|109
11FV|1|C|A|110
11FV|1|C|G|111
11FV|1|C|U|112
11FV|1|C|A|113
11FV|1|C|A|114
11FV|1|C|U|115
11FV|1|C|G|116
*
11FV|1|C|U|233
11FV|1|C|C|234
*
11FV|1|C|G|280
11FV|1|C|U|281
11FV|1|C|A|282
11FV|1|C|A|283
*
11FV|1|C|U|305
11FV|1|C|C|306
Current chains
- Chain C
- 16S ribosomal RNA
Nearby chains
- Chain x
- Small ribosomal subunit protein bS16
- Chain y
- Small ribosomal subunit protein uS17
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