J4_11FV_004

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

11FV|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11FV_004 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2652

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

11FV|1|I|C|268
11FV|1|I|C|269
*
11FV|1|I|G|370
11FV|1|I|A|371
11FV|1|I|G|372
11FV|1|I|U|373
11FV|1|I|A|374
11FV|1|I|G|375
*
11FV|1|I|U|399
11FV|1|I|G|400
11FV|1|I|A|401
11FV|1|I|A|402
11FV|1|I|U|403
11FV|1|I|A|404
11FV|1|I|U|405
11FV|1|I|G|406
*
11FV|1|I|C|421
11FV|1|I|A|422
11FV|1|I|A|423
11FV|1|I|G|424

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein bL9

Chain f

50S ribosomal protein L28