J4_11FV_009

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

11FV|1|I|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11FV_009 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.2472

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

11FV|1|I|U|1313
11FV|1|I|C|1314
*
11FV|1|I|G|1338
11FV|1|I|G|1339
11FV|1|I|U|1340
11FV|1|I|G|1341
11FV|1|I|A|1342
11FV|1|I|G|1343
*
11FV|1|I|C|1404
11FV|1|I|U|1405
*
11FV|1|I|A|1597
11FV|1|I|A|1598
11FV|1|I|U|1599
11FV|1|I|C|1600
11FV|1|I|G|1601
11FV|1|I|U|1602
11FV|1|I|A|1603

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L23