J4_11HG_003

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACGAUG*UU

Length

23 nucleotides

Bulged bases

11HG|1|18|A|672, 11HG|1|18|A|1083, 11HG|1|18|C|1085, 11HG|1|18|A|1087

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11HG_003 not in the Motif Atlas

Homologous match to J4_9H3G_014

Geometric discrepancy: 0.119

The information below is about J4_9H3G_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.3

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

6

Unit IDs

11HG|1|18|A|671
11HG|1|18|A|672
11HG|1|18|G|673
*
11HG|1|18|C|1032
11HG|1|18|G|1033
11HG|1|18|A|1034
11HG|1|18|A|1035
11HG|1|18|A|1036
11HG|1|18|G|1037
*
11HG|1|18|C|1078
11HG|1|18|C|1079
11HG|1|18|A|1080
11HG|1|18|U|1081
11HG|1|18|A|1082
11HG|1|18|A|1083
11HG|1|18|A|1084
11HG|1|18|C|1085
11HG|1|18|G|1086
11HG|1|18|A|1087
11HG|1|18|U|1088
11HG|1|18|G|1089
*
11HG|1|18|U|1160
11HG|1|18|U|1161

Current chains

Chain 18

18S rRNA

Nearby chains

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain 41

eL41

Chain DD

Small ribosomal subunit protein uS17

Chain FF

40S ribosomal protein S13

Chain GG

Small ribosomal subunit protein uS11

Chain RR

uS12

Chain UU

eS26

Chain WX

40S ribosomal protein S15a

Chain ff

60S ribosomal protein L37a