J4_9H3G_014
3D structure
- PDB id
- 9H3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.82 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*(PSU)U
- Length
- 23 nucleotides
- Bulged bases
- 9H3G|1|h1|A|625, 9H3G|1|h1|A|1027, 9H3G|1|h1|C|1029, 9H3G|1|h1|A|1031
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H3G|1|h1|A|624
9H3G|1|h1|A|625
9H3G|1|h1|G|626
*
9H3G|1|h1|C|976
9H3G|1|h1|G|977
9H3G|1|h1|A|978
9H3G|1|h1|A|979
9H3G|1|h1|A|980
9H3G|1|h1|G|981
*
9H3G|1|h1|C|1022
9H3G|1|h1|C|1023
9H3G|1|h1|A|1024
9H3G|1|h1|PSU|1025
9H3G|1|h1|A|1026
9H3G|1|h1|A|1027
9H3G|1|h1|A|1028
9H3G|1|h1|C|1029
9H3G|1|h1|G|1030
9H3G|1|h1|A|1031
9H3G|1|h1|U|1032
9H3G|1|h1|G|1033
*
9H3G|1|h1|PSU|1104
9H3G|1|h1|U|1105
Current chains
- Chain h1
- Ribosomal RNA 18S
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AE
- Small ribosomal subunit protein uS8z/uS8w
- Chain BC
- Small ribosomal subunit protein eS32 eS32z/eS32y/eS32x/eS32w/eS32v
- Chain BE
- Large ribosomal subunit protein eL43y
- Chain Da
- Small ribosomal subunit protein uS15y
- Chain Ma
- Small ribosomal subunit protein eS26y
- Chain Ua
- Small ribosomal subunit protein uS11y
- Chain Va
- Small ribosomal subunit protein uS12y
- Chain Xa
- Small ribosomal subunit protein uS17z
Coloring options: