J4_11HG_007

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

11HG|1|28|A|2366, 11HG|1|28|U|2369, 11HG|1|28|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11HG_007 not in the Motif Atlas

Homologous match to J4_8GLP_004

Geometric discrepancy: 0.06

The information below is about J4_8GLP_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11HG|1|28|C|2365
11HG|1|28|A|2366
11HG|1|28|A|2367
11HG|1|28|A|2368
11HG|1|28|U|2369
11HG|1|28|A|2370
11HG|1|28|U|2371
*
11HG|1|28|A|2389
11HG|1|28|G|2390
11HG|1|28|G|2391
*
11HG|1|28|C|2824
11HG|1|28|A|2825
11HG|1|28|U|2826
11HG|1|28|G|2827
11HG|1|28|U|2828
11HG|1|28|U|2829
*
11HG|1|28|A|3856
11HG|1|28|G|3857

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 17

60S ribosomal protein L17

Chain 19

60S ribosomal protein L19

Chain 31

60S ribosomal protein L31