J4_8GLP_004

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

8GLP|1|L5|A|2366, 8GLP|1|L5|U|2369, 8GLP|1|L5|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8GLP|1|L5|OMC|2365
8GLP|1|L5|A|2366
8GLP|1|L5|A|2367
8GLP|1|L5|A|2368
8GLP|1|L5|U|2369
8GLP|1|L5|A|2370
8GLP|1|L5|U|2371
*
8GLP|1|L5|A|2389
8GLP|1|L5|G|2390
8GLP|1|L5|G|2391
*
8GLP|1|L5|OMC|2824
8GLP|1|L5|A|2825
8GLP|1|L5|U|2826
8GLP|1|L5|G|2827
8GLP|1|L5|U|2828
8GLP|1|L5|U|2829
*
8GLP|1|L5|A|3856
8GLP|1|L5|G|3857

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31