J4_11HG_010

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11HG_010 not in the Motif Atlas

Homologous match to J4_9AXU_007

Geometric discrepancy: 0.0743

The information below is about J4_9AXU_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.4

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

8

Unit IDs

11HG|1|28|G|3634
11HG|1|28|A|3635
11HG|1|28|C|3636
11HG|1|28|U|3637
11HG|1|28|G|3638
*
11HG|1|28|C|3650
11HG|1|28|A|3651
11HG|1|28|A|3652
11HG|1|28|A|3653
11HG|1|28|G|3654
*
11HG|1|28|U|3690
11HG|1|28|G|3691
11HG|1|28|A|3692
11HG|1|28|U|3693
11HG|1|28|U|3694
*
11HG|1|28|A|3821
11HG|1|28|U|3822
11HG|1|28|G|3823
11HG|1|28|A|3824
11HG|1|28|A|3825
11HG|1|28|C|3826

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 18

Small subunit ribosomal RNA; SSU rRNA

Chain 41

eL41

Chain L8

60S ribosomal protein L8

Chain ff

60S ribosomal protein L37a