J4_9AXU_007

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

9AXU|1|2|G|2218
9AXU|1|2|A|2219
9AXU|1|2|C|2220
9AXU|1|2|U|2221
9AXU|1|2|G|2222
*
9AXU|1|2|C|2234
9AXU|1|2|A|2235
9AXU|1|2|U|2236
9AXU|1|2|A|2237
9AXU|1|2|G|2238
*
9AXU|1|2|U|2274
9AXU|1|2|G|2275
9AXU|1|2|A|2276
9AXU|1|2|U|2277
9AXU|1|2|U|2278
*
9AXU|1|2|A|2405
9AXU|1|2|U|2406
9AXU|1|2|U|2407
9AXU|1|2|A|2408
9AXU|1|2|A|2409
9AXU|1|2|C|2410

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein eL43A

Chain N

Large ribosomal subunit protein uL2C