J4_11HV_007
3D structure
- PDB id
- 11HV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV open
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 11HV|1|28|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_11HV_007 not in the Motif Atlas
- Homologous match to J4_9H3G_008
- Geometric discrepancy: 0.147
- The information below is about J4_9H3G_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.3
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
11HV|1|28|C|3696
11HV|1|28|U|3697
11HV|1|28|G|3698
*
11HV|1|28|C|3752
11HV|1|28|G|3753
*
11HV|1|28|C|3771
11HV|1|28|U|3772
11HV|1|28|U|3773
11HV|1|28|A|3774
11HV|1|28|A|3775
11HV|1|28|G|3776
11HV|1|28|G|3777
11HV|1|28|U|3778
11HV|1|28|A|3779
11HV|1|28|G|3780
*
11HV|1|28|U|3814
11HV|1|28|G|3815
11HV|1|28|A|3816
11HV|1|28|A|3817
11HV|1|28|U|3818
11HV|1|28|G|3819
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain L8
- 60S ribosomal protein L8
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