J4_11HV_009

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GGG

Length

16 nucleotides

Bulged bases

11HV|1|28|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_11HV_009 not in the Motif Atlas

Homologous match to J4_8GLP_012

Geometric discrepancy: 0.1463

The information below is about J4_8GLP_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_59590.3

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F

Number of instances in this motif group

4

Unit IDs

11HV|1|28|C|4231
11HV|1|28|U|4232
11HV|1|28|A|4233
11HV|1|28|A|4234
11HV|1|28|G|4235
*
11HV|1|28|U|4289
11HV|1|28|U|4290
11HV|1|28|G|4291
11HV|1|28|A|4292
11HV|1|28|U|4293
*
11HV|1|28|A|4317
11HV|1|28|C|4318
11HV|1|28|C|4319
*
11HV|1|28|G|4328
11HV|1|28|G|4329
11HV|1|28|G|4330

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 21

60S ribosomal protein L21

Chain 29

Large ribosomal subunit protein eL29

Chain 42

eL42

Chain L5

60S ribosomal protein L5